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ERX2891398: Illumina HiSeq 2500 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2500) run: 4.5M spots, 679.5M bases, 266.3Mb downloads

Design: RNA seq A. salmonicida luxI and ainS mutants
Submitted by: University of Tromso
Study: Gene expression profiling of LuxI and AinS and inhabitation of biofilm formation in Aliivibrio salmonicida by N-acyl homoserine 3-oxo-C6 and 3OH-C10 in vitro
show Abstracthide Abstract
The fish pathogen Aliivibrio salmonicida is the causative agent of the cold-water vibriosis in marine aquacultures. A. salmonicida uses quorum sensing to regulate activities as motility, biofilm formation and adhesion, and processes AinS/R and LuxI/R quorum sensing systems (QS) responsible for the production of eight homoserine lactones (HSLs). By comparing the ainS and luxI mutants to the A. salmonicida wild-type, essential genes regulated by QS signaling were identified suing RNA sequencing. The functional analysis of the differentially expressed genes presented that the most pronounced regulation was involved in bacterial motility and chemotaxis, exopolysaccharide production and surface structures related to adhesion. Moreover, using phenotypical analysis the rugose colony morphology and formed biofilms were disrupted by two highly abundant HSLs, the 3OC6 and 3OHC10. These findings imply that LuxI and AinS synthases have a critical contribution to the QS-dependent regulation on gene expression and the phenotypic traits related to it.
Sample: RNA seq A. salmonicida luxI and ainS mutants
SAMEA5057500 • ERS2868674 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: rRNA depleted samples were used to generate RNA-sequencing libraries using TruSeq strandard mRNA library prep kit (Illumina)
Runs: 1 run, 4.5M spots, 679.5M bases, 266.3Mb
Run# of Spots# of BasesSizePublished
ERR28864734,470,606679.5M266.3Mb2019-01-24

ID:
7134896

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